LLM

RegFM: an interpretable context-aware foundation model for human transcriptional regulation

Zijing Gao, Yining Sun, Haochen Wang, Rui Jiang, Qiao Liu^*. bioRxiv, 2026.

Zijing Gao, Yining Sun, Haochen Wang, Rui Jiang, Qiao Liu

RegFM: an interpretable context-aware foundation model for human transcriptional regulation

Conditional Attribute Estimation with Autoregressive Sequence Models

Erica Stutz, Giacomo Marino, Daniella Meeker, Qiao Liu, and Andrew J. Loza. arXiv, 2026.

Erica Stutz, Giacomo Marino, Daniella Meeker, Qiao Liu, Andrew J. Loza

Conditional Attribute Estimation with Autoregressive Sequence Models

Leveraging genomic foundation models to identify genotype-brain-clinical pathways in Alzheimer's disease

Qiao Liu^†,*, Zhaoyang Zhang^†, Haochen Wang, Heping Zhang, Hongtu Zhu, Lexin Li^*, Wing Hung Wong^*. medRxiv, 2026.

Qiao Liu, Zhaoyang Zhang, Haochen Wang, Heping Zhang, Hongtu Zhu, Lexin Li, Wing Hung Wong

Leveraging genomic foundation models to identify genotype-brain-clinical pathways in Alzheimer's disease

EpiGePT: a pretrained transformer-basedlanguage model for context-specific humanepigenomics

Zijing Gao^†, Qiao Liu^†,*, Wanwen Zeng, Rui Jiang^*, Wing Hung Wong^*. Genome Biology, 2024.

Zijing Gao, Qiao Liu, Wanwen Zeng, Rui Jiang, Wing Hung Wong

EpiGePT: a pretrained transformer-basedlanguage model for context-specific humanepigenomics