Genomics

Simultaneous deep generative modelling and clustering of single-cell genomic data

Qiao Liu, Shengquan Chen, Rui Jiang^*, Wing Hung Wong^*. Nature Machine Intelligence, 2021.

Qiao Liu, Shengquan Chen, Rui Jiang, Wing Hung Wong

Simultaneous deep generative modelling and clustering of single-cell genomic data

DeepCDR: a hybrid graph convolutional network for predicting cancer drug response

Qiao Liu, Zhiqiang Hu, Rui Jiang^*, Mu Zhou^*. ECCB Proceedings/Bioinformatics, 2020

Qiao Liu, Zhiqiang Hu, Rui Jiang, Mu Zhou

DeepCDR: a hybrid graph convolutional network for predicting cancer drug response

Feature-enhanced graph networks for genetic mutational prediction using histopathological images in colon cancer

Kexin Ding, Qiao Liu, Edward Lee, Mu Zhou, Aidong Lu & Shaoting Zhang^*. MICCAI, 2020.

Kexin Ding, Qiao Liu, Edward Lee, Mu Zhou, Aidong Lu, Shaoting Zhang

Mstree: a multispecies coalescent approach for estimating ancestral population size and divergence time during speciation with gene flow

Junfeng Liu^*, Qiao Liu, Qingzhu Yang^*. Genome biology and evolution, 2020.

Junfeng Liu, Qiao Liu, Qingzhu Yang

Quantifying functional impact of non-coding variants with multi-task Bayesian neural network

Chencheng Xu, Qiao Liu, Jianyu Zhou, Minzhu Xie, Jianxing Feng^*, Tao Jiang^*. Bioinformatics, 2020.

Chencheng Xu, Qiao Liu, Jianyu Zhou, Minzhu Xie, Jianxing Feng, Tao Jiang

EpiFIT: functional interpretation of transcription factors based on combination of sequence and epigenetic information

Shaoming Song, Hongfei Cui, Shengquan Chen, Qiao Liu, Rui Jiang^*. Quantitative Biology, 2019.

Shaoming Song, Hongfei Cui, Shengquan Chen, Qiao Liu, Rui Jiang

hicGAN infers super resolution Hi-C data with generative adversarial networks

Qiao Liu, Hairong Lv, Rui Jiang^*. ISMB Proceedings/Bioinformatics, 2019

Qiao Liu, Hairong Lv, Rui Jiang

hicGAN infers super resolution Hi-C data with generative adversarial networks

DeepHistone: a deep learning approach to predicting histone modifications

Qijin Yin, Mengmeng Wu, Qiao Liu, Hairong Lv^* & Rui Jiang^*. BMC genomics, 2019.

Qijin Yin, Mengmeng Wu, Qiao Liu, Hairong Lv, Rui Jiang

Chromatin accessibility prediction via a hybrid deep convolutional neural network

Qiao Liu, Xia Fei, Qijin Yin and Rui Jiang^*. Bioinformatics, 2017.

Qiao Liu, Fei Xia, Qijin Yin, Rui Jiang

Chromatin accessibility prediction via a hybrid deep convolutional neural network

A sequence-based method to predict the impact of regulatory variants using random forest

Qiao Liu, Mingxin Gan & Rui Jiang^*. BMC Systems Biology, 2017.

Qiao Liu, Mingxin Gan, Rui Jiang