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Multi-modal Diffusion Model with Dual-Cross-Attention for Multi-Omics Data Generation and Translation
Erpai Luo, Lei Wei, Minsheng Hao, Xuegong Zhang†, Qiao Liu†. bioRxiv 2025 (Nat. Commun. in revision)
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Multi-modal Diffusion Model with Dual-Cross-Attention for Multi-Omics Data Generation and Translation
EpiGePT: a pretrained transformer-basedlanguage model for context-specific humanepigenomics
Zijing Gao*, Qiao Liu*,†, Wanwen Zeng, Rui Jiang†, Wing Hung Wong†. Genome Biology, 2024.
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EpiGePT: a pretrained transformer-basedlanguage model for context-specific humanepigenomics
HiChIPdb: a comprehensive database of HiChIP regulatory interactions
Wanwen Zeng*, Qiao Liu*, Qijin Yin*, Rui Jiang, Wing Hung Wong. Nucleic Acids Research, 2022.
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HiChIPdb: a comprehensive database of HiChIP regulatory interactions
Simultaneous deep generative modelling and clustering of single-cell genomic data
Qiao Liu, Shengquan Chen, Rui Jiang, Wing Hung Wong. Nature Machine Intelligence, 2021.
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Simultaneous deep generative modelling and clustering of single-cell genomic data
DeepCDR: a hybrid graph convolutional network for predicting cancer drug response
Qiao Liu, Zhiqiang Hu, Rui Jiang, Mu Zhou. ECCB Proceedings/Bioinformatics, 2020
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DeepCDR: a hybrid graph convolutional network for predicting cancer drug response
hicGAN infers super resolution Hi-C data with generative adversarial networks
Qiao Liu, Hairong Lv, Rui Jiang. ISMB Proceedings/Bioinformatics, 2019
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hicGAN infers super resolution Hi-C data with generative adversarial networks
Protein folding optimization based on 3D off-lattice model via an improved artificial bee colony algorithm
Bai Li, Mu Lin, Qiao Liu, Ya Li & Changjun Zhou. Journal of Molecular Modeling, 2015.
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