Article-Journal

Deep generative modeling and clustering of single cell Hi-C data
Qiao Liu, Wanwen Zeng, Wei Zhang, Sicheng Wang, Hongyang Chen, Rui Jiang, Mu Zhou, Shaoting Zhang. Brief. Bioinform, 2022.
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Deep generative modeling and clustering of single cell Hi-C data
HiChIPdb: a comprehensive database of HiChIP regulatory interactions
Wanwen Zeng*, Qiao Liu*, Qijin Yin*, Rui Jiang, Wing Hung Wong. Nucleic Acids Research, 2022.
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HiChIPdb: a comprehensive database of HiChIP regulatory interactions
AggEnhance: Aggregation Enhancement by Class Interior Points in Federated Learning with Non-IID Data
Jinxiang Ou, Yunheng Shen, Feng Wang, Qiao Liu, Xuegong Zhang, Hairong Lv. ACM Transactions on Intelligent Systems and Technology, 2022.
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Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG
Zhana Duren, Fengge Chang, Fnu Naqing, Jingxue Xin, Qiao Liu, Wing Hung Wong. Genome Biology, 2022.
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DualGCN: a dual graph convolutional network model to predict cancer drug response
Tianxing Ma, Qiao Liu, Haochen Li, Mu Zhou, Rui Jiang & Xuegong Zhang. BMC Bioinformatics, 2022.
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scGraph: a graph neural network-based approach to automatically identify cell types
Qijin Yin, Qiao Liu, Zhuoran Fu, Rui Jiang. Bioinformatics, 2022.
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DeepCAGE: Incorporating Transcription Factors in Genome-Wide Prediction of Chromatin Accessibility
Qiao Liu, Kui Hua, Xuegong Zhang, Wing Hung Wong, Rui Jiang. Genomics, Proteomics & Bioinformatics, 2022.
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DeepCAGE: Incorporating Transcription Factors in Genome-Wide Prediction of Chromatin Accessibility
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions
Shengquan Chen, Qiao Liu, Xuejian Cui, Zhanying Feng, Chunquan Li, Xiaowo Wang, Xuegong Zhang, Yong Wang, Rui Jiang. Nucleic Acids Research, 2021.
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Simultaneous deep generative modelling and clustering of single-cell genomic data
Qiao Liu, Shengquan Chen, Rui Jiang, Wing Hung Wong. Nature Machine Intelligence, 2021.
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Simultaneous deep generative modelling and clustering of single-cell genomic data
Density estimation using deep generative neural networks
Qiao Liu, Jiaze Xu, Rui Jiang, Wing Hung Wong. PNAS, 2021.
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Density estimation using deep generative neural networks