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An AI-powered Bayesian generative modeling approach for causal inference in observational studies
Qiao Liu* and Wing Hung Wong. Journal of the American Statistical Association, 2026.
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An AI-powered Bayesian generative modeling approach for causal inference in observational studies
A Multi-modal Diffusion Model with Dual-Cross-Attention for Multi-Omics Data Generation and Translation
Erpai Luo, Lei Wei, Minsheng Hao, Xuegong Zhang*, Qiao Liu*. Nature Communications, 2026.
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A Multi-modal Diffusion Model with Dual-Cross-Attention for Multi-Omics Data Generation and Translation
Toward the simultaneous detection of multiple diseases with a highly cost-effective cell-free DNA methylome test
Weihua Zeng, Chun-Chi Liu, Shuo Li, Yonggang Zhou, Mary L. Stackpole, Ying Xiao, Ran Hu, Caitlin Tang, Qiao Liu, et al. PNAS, 2026.
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Improving polygenic prediction from whole-genome sequencing data by leveraging predicted epigenomic features
Wanwen Zeng, Hanmin Guo, Qiao Liu, Wing Hung Wong*. PNAS, 2025.
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CREATE: cell-type-specific cis-regulatory element identification via discrete embedding
Xuejian Cui, Qijin Yin, Zijing Gao, Zhen Li, Xiaoyang Chen, Hairong Lv, Shengquan Chen, Qiao Liu, Wanwen Zeng*, Rui Jiang*. Nature Communications, 2025.
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Application of LLMs/Transformer-Based Models for Metabolite Annotation in Metabolomics
Yijiang Liu, Feifan Zhang, Yifei Ge, Qiao Liu, Siyu He, and Xiaotao Shen*. Health and Metabolism, 2025.
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Deconer: An Evaluation Toolkit for Reference-based Deconvolution Methods Using Gene Expression Data
In recent years, computational methods for quantifying cell-type proportions from transcription data have gained significant attention, …
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EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics
Zijing Gao†, Qiao Liu†,*, Wanwen Zeng, Rui Jiang*, Wing Hung Wong*. Genome Biology, 2024.
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EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics
An encoding generative modeling approach to dimension reduction and covariate adjustment in causal inference with observational studies
Qiao Liu, Zhongren Chen, Wing Hung Wong*. PNAS, 2024.
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An encoding generative modeling approach to dimension reduction and covariate adjustment in causal inference with observational studies
DeepAEG: a model for predicting cancer drug response based on data enhancement and edge-collaborative update strategies
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